LncBase Experimental v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
AC003092.1
hsa-miR-298
0.560
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000415536
Biotype: lincRNA
Gene id: ENSG00000236453
Gene Name: AC003092.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:94064615-94064643
exon
HITS-CLIP
DIRECT
LncBasev2
AC005540.3
hsa-miR-298
-
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000413911
Biotype: antisense
Gene id: ENSG00000235852
Gene Name: AC005540.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:190880875-190880924
exon
HITS-CLIP
DIRECT
LncBasev2
EHMT1-IT1
hsa-miR-298
0.514
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: NR_024341.1
Biotype: sense
Gene id: NR_024341.1 (gene)
Gene Name: EHMT1-IT1
UCSC graphic: -
Expression: -

miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:137763523-137763551
exon
HITS-CLIP
DIRECT
LncBasev2
LINC00657
hsa-miR-298
0.424
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000565493
Biotype: lincRNA
Gene id: ENSG00000260032
Gene Name: LINC00657
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:36050810-36050838
exon
HITS-CLIP
DIRECT
LncBasev2
MALAT1
hsa-miR-298
0.458
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65504509-65504537
exon
HITS-CLIP
DIRECT
LncBasev2
11:65504509-65504537
exon
HITS-CLIP
DIRECT
LncBasev2
MIR663AHG
hsa-miR-298
0.644
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000427348
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:26209178-26209206
exon
HITS-CLIP
DIRECT
LncBasev2
MT1P1
hsa-miR-298
-
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000396160
Biotype: processed_pseudogene
Gene id: ENSG00000213761
Gene Name: MT1P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:95413344-95413378
exon
HITS-CLIP
DIRECT
LncBasev2
MT1XP1
hsa-miR-298
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000421314
Biotype: processed_pseudogene
Gene id: ENSG00000233929
Gene Name: MT1XP1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:16241290-16241324
exon
HITS-CLIP
DIRECT
LncBasev2
MT2P1
hsa-miR-298
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000262499
Biotype: processed_pseudogene
Gene id: ENSG00000162840
Gene Name: MT2P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS27a
IP
Tested Cell Line: HS27a
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:68376397-68376431
exon
HITS-CLIP
DIRECT
LncBasev2
4:68376397-68376431
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-298
0.970
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65443196-65443224
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444429-65444457
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434536-65434564
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442210-65442238
exon
HITS-CLIP
DIRECT
LncBasev2
11:65429378-65429406
exon
HITS-CLIP
DIRECT
LncBasev2
11:65429411-65429439
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442210-65442238
exon
HITS-CLIP
DIRECT
LncBasev2
11:65434812-65434840
exon
HITS-CLIP
DIRECT
LncBasev2
P2RX5-TAX1BP3
hsa-miR-298
0.556
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: NR_037928.1
Biotype: sense
Gene id: NR_037928.1 (gene)
Gene Name: P2RX5-TAX1BP3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:3663498-3663526
exon
HITS-CLIP
DIRECT
LncBasev2
PARD6G-AS1
hsa-miR-298
0.523
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000588226
Biotype: antisense
Gene id: ENSG00000267270
Gene Name: PARD6G-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS27a
IP
Tested Cell Line: HS27a
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
18:80149059-80149087
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-278E11.3
hsa-miR-298
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000325612
Biotype: processed_pseudogene
Gene id: ENSG00000180211
Gene Name: RP1-278E11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS27a
IP
Tested Cell Line: HS27a
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:39958486-39958514
exon
HITS-CLIP
DIRECT
LncBasev2
6:39958486-39958514
exon
HITS-CLIP
DIRECT
LncBasev2
RPL14P1
hsa-miR-298
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000484568
Biotype: processed_pseudogene
Gene id: ENSG00000139239
Gene Name: RPL14P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:62965752-62965801
exon
HITS-CLIP
DIRECT
LncBasev2
TMX2-CTNND1
hsa-miR-298
0.849
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: NR_037646.1
Biotype: sense
Gene id: NR_037646.1 (gene)
Gene Name: TMX2-CTNND1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS27a
IP
Tested Cell Line: HS27a
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:57808412-57808440
exon
HITS-CLIP
DIRECT
LncBasev2
11:57808412-57808440
exon
HITS-CLIP
DIRECT
LncBasev2
ZFP91-CNTF
hsa-miR-298
0.501
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: NR_024091.1
Biotype: sense
Gene id: NR_024091.1 (gene)
Gene Name: ZFP91-CNTF
UCSC graphic: -
Expression: -

miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:58614295-58614323
exon
HITS-CLIP
DIRECT
LncBasev2
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